Software Downloads
SBW Distribution
SBW offers many features, including native language libraries (currently for C, C++, Delphi, Java, Perl and Python), tutorial and demonstration modules, and documentation. Note that SBW provides infrastructure for other programs, and does not have a user interface per se. After installing SBW, you will want to download modules to use with it. Check the Contributed Software section below.
| Windows 98SE/2000/XP (Warnings) |
Linux | MacOS X | |
| Minimal (explanation): | 1.0.5 installer (5.8 MB) | Coming for 1.1 | Coming for 1.1 |
| Full (explanation): | 1.0.5 installer (25 MB) | Coming for 1.1 | Coming for 1.1 |
| Source only (explanation): | 1.0.5 src zip (18 MB) | 1.0.5 src zip (18 MB) | Coming for 1.1 |
Requirements: For details, please read the installation instructions. You will need Java 1.3.x or later. If you wish to use the SBW Python scripting interface, you will also need Python version 2.1 or later, and the Numerical Python package version 20 or later. If you wish to use the SBW Perl scripting interface, you will need Perl version 5.6 or later. (On Windows, we use the ActivePerl port.)
Change log: For details about the changes between versions of SBW, please consult the NEWS.txt file.
Reporting SBW Problems
Please report bugs using our bug reporting facility on SourceForge.net. (You will need to have a SourceForge account to do this, but getting one is free and easy.) Using the bug-tracking facility will help us continue to improve SBW.
Contributed SBW-Enabled Software
Other parties have been developing software for use with SBW. Below are links to this contributed software.
| Description | Date | Link |
| Jarnac, a biochemical
simulation package for Windows. Written by Herbert M. Sauro and available under LGPL. This is a binary installation that includes modifications for working with SBW. The source code is available seperately from the Jarnac homepage, http://www.sys-bio.org/Jarnac.htm. |
2002-07-03 | 2.0 |
| JDesigner, a visual biochemical network
layout tool that can export models in SBML format.
Written by Herbert M. Sauro and available under LGPL. This is both a binary and source code installation that includes modifications for working with SBW. The home page for JDesigner is http://www.sys-bio.org/JDesigner.htm |
2002-11-30 | 1.7 |
| TauLeapService,
a module implementing Gillespie's Approximate Accelerated
Stochastic Algorithm for chemically reacting systems. This is implemented
as a service for SBW, and is supplied as source code and in binary form for
MS windows. Written by Pieter van der Zee, University of Hertfordshire, and available under LGPL. |
2002-12-20 | 1.0 |
| MetaToolSBW, a wrapper around Stefan
Schuster's MetaTool package. MetaTool provides a variety of functions,
including the ability to compute elementary modes, null spaces and
conservation vectors for arbitrary networks. MetaToolSBW can accept
models from either MetaTool input files, or SBML Level 1 via the "NOM"
included with SBW.
Written by Herbert M. Sauro and available under LGPL. |
2002-08-20 | 1.0 |
| Pasadena Twain, a simple interactive ODE
solver with an SBW interface.
Written by Herbert M. Sauro and available under LGPL. |
2002-11-07 | 1.1 |
| SBML Validator, a simple tool for checking
the syntax of an SBML file.
Written by Herbert M. Sauro and available under LGPL. |
2002-04-22 | 1.01 |
| TrayTool, a simple module that sits in the
Windows tray and provides a list of running SBW modules when clicked.
Written by Herbert M. Sauro and available under LGPL. |
2002-06-11 | 1.0 |
| Inspector, a module that allows you to
list running modules and inspect the services that they expose via SBW.
Written by Herbert M. Sauro and available under LGPL. |
2002-06-11 | 0.4 |
| GillespieService, a module implementing
Gillespie's algorithm for stochastic simulation and providing it as a
service for SBW.
Written by Herbert M. Sauro and available under LGPL. |
2002-04-22 | 1.0 |
| Bifurcation Module, a module that performs
bifurcation analysis using bifpack and provides it as a service
for SBW. (This is a first-cut implementation; an improved version is
forthcoming.)
Written by Herbert M. Sauro and available under LGPL. |
2002-07-03 | 0.9 |
| Optimization Module, a module that
performs optimization and provides it as a service for SBW.
Written by Herbert M. Sauro and available under LGPL. |
2002-07-03 | 0.9 |